Videos 1-12 of 47
Show me videos in format
Search these videos
C260A-09 Lecture 16, part 2: HMMs for alignment
9 days ago 14 0
Forward backward algorithm for pairwise alignment HMM, and HMM profile model of sequence alignment.
Christopher Lee
C260A-09 Lecture 16, part 1: affine gap dynamic programing alignment
9 days ago 14 0
Covers dynamic programming pairwise alignment with affine gap penalties
Christopher Lee
C260A-09 Lecture 15, part 2: RNA Secondary structure
11 days ago 16 0
Covers detection of RNA secondary structure using dynamic programming.
Christopher Lee
C260A-09 Lecture 15, part 1: Overlap, Repeat Alignment
11 days ago 14 0
Dynamic programming sequence alignment applied to overlap (assembly) and repeat alignment.
Christopher Lee
C260A 09 Lecture 14 part 2: Global and Local alignment
16 days ago 22 0
Covers the second hour of the lecture on dynamic programming pairwise alignment.
Christopher Lee
C260A 09 Lecture 14, part I: Pairwise sequence alignment
16 days ago 35 0
Covers first hour of lecture on dynamic programming sequence alignment.
Christopher Lee
C260A Lecture 13: HMM CpG and gene models
23 days ago 15 0
In which we work through the details of HMMs for CpG island and gene prediction.
Christopher Lee
Essential tools for bioinformatics collaboration: a tutorial on using Git for bioinformatics software development, data analysis
26 days ago 8 0
Bioinformatics typically requires collaboration between multiple people with different expertise. In such a collaboration, each person should explore independently using everything their colleagues have contributed, and then be able to easily merge different people's explorations. It is vital not to […]
Christopher Lee
C260A Lecture 11: Baum-Welch Training
30 days ago 16 0
Covers the basic theory of Baum-Welch training for HMM parameters.
Christopher Lee
C260A-09 Lecture 10: Forward-Backward Algorithm
1 month ago 14 0
Implementing the forward-backward HMM posterior probability calculation, both as a spreadsheet and pseudocode.
Christopher Lee
C260A lecture 9: Viterbi algorithm and forward-backward
1 month ago 45 0
HMM best path and posterior probability calculations
Christopher Lee
C260A-09 Hidden Markov Model intro
1 month ago 40 0
covers introduction to markov chains, HMMs, and the Viterbi algorithm.
Christopher Lee

Christopher Lee's videos

Here are all Christopher Lee's videos on Vimeo. You can see both the videos this user has uploaded, as well as any other users' videos they appear in.

Choose "Uploaded" to see the videos this user has uploaded to Vimeo. Choose "Other Credits" to see the videos that Christopher Lee is credited in by other users.

We recommend using the sort bar which allows you to view these videos in different orders or formats. If you are looking for a particular video, use the "search these videos" link.