Robert Chalkley’s Videos
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PP - Getting Started / Simple Search
06:20In this tutorial I explain how to set up a user account and complete a simple search using Batch-Tag Web.
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Protein Prospector - MS-Viewer
14:49This tutorial describes the use of MS-Viewer, a free spectral viewer that is part of the Protein Prospector package of proteomic analysis tools. It allows viewing of results from Protein Prospector…
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Protein Prospector: Cross-linked Peptide Analysis
18:14This tutorial describes how to use Protein Prospector to identify cross-linked peptides. A more complete description of the software can be found in the publication: Mol Cell Proteomics (2014) 13…
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17:22
This is an updated tutorial describing features that have been added to MS-Viewer in the last couple of years. Many of these features are described in more detail in the following publication: Mol…
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PP - Unknown Mass Modification Searching
12:08This tutorial describes how it is possible using Batch-Tag in Protein Prospector to identify unanticipated/unpredicted peptide modifications.
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PP - Search Compare / Viewing Results
18:24In this tutorial I describe the various filtering and viewing parameters available in Search Compare for analyzing your MSMS database search results.
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Installing the Basic Version of Protein Prospector on Windows 7
06:22This tutorial walks you through the installation of the basic version of Protein Prospector (version that does does not support batch MSMS analysis: most simple to install) on Windows 7.
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PP - Site Assignment (SLIP) Scoring
10:39In this tutorial we describe modification site assignment (SLIP) scoring integrated into Protein Prospector. Using this, a reliability score is reported for all modification assignments. We explain…
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Browse Videos
VideosHere are all of the videos that Robert Chalkley has uploaded to Vimeo. Appearances are videos that Robert Chalkley has been credited in by others.