This tutorial covers a glycopeptide data analysis pipeline in Protein Prospector. After optionally filtering peak lists for the presence of glycan oxonium ions, Batch-Tag is used for an initial identification of glycopeptides. Then, MS-Filter is used to identify additional glycoforms and score assignments.
These videos describe how to search and analyze mass spectrometric proteomic data using the software 'Protein Prospector'. The videos include tips on analysis strategies, many of which are applicable to analyses using alternative search engines.
